If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ), 'gf_id' => 'HOM05D000742', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000742' ), 'data_identifier' => 'HOM05D000742', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000742', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '786', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09790' => 'bna', 'A02p03810' => 'bna', 'A03p08010' => 'bna', 'A03p32670' => 'bna', 'A03p50640' => 'bna', 'A03p50660' => 'bna', 'A06p10320' => 'bna', 'A06p45550' => 'bna', 'A07p02590' => 'bna', 'A08p32010' => 'bna', 'A10p22390' => 'bna', 'Aa31LG11G12740' => 'aar', 'Aa31LG1G710' => 'aar', 'Aa31LG5G12400' => 'aar', 'Aa31LG6G470' => 'aar', 'Aa31LG9G18090' => 'aar', 'Aa31sc182G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.807' => 'aag', 'Actinidia03353' => 'ach', 'Actinidia03946' => 'ach', 'Actinidia08750' => 'ach', 'Actinidia25989' => 'ach', 'Actinidia34316' => 'ach', 'Actinidia37792' => 'ach', 'Actinidia38431' => 'ach', 'Ah.07g200820' => 'amhyb', 'Ah.10g031390' => 'amhyb', 'Ah.10g031400' => 'amhyb', 'Ah.12g055360' => 'amhyb', 'AL1G26220' => 'aly', 'AL2G26970' => 'aly', 'AL3G11030' => 'aly', 'AL6G27860' => 'aly', 'AL7G36850' => 'aly', 'AL7G43610' => 'aly', 'AL8G11430' => 'aly', 'Aqoxy1G00552' => 'aox', 'Aqoxy271s003' => 'aox', 'Aqoxy271s004' => 'aox', 'Aqoxy2G01015' => 'aox', 'Aqoxy2G01016' => 'aox', 'Aqoxy3G00703' => 'aox', 'Aqoxy3G02213' => 'aox', 'Aqoxy3G03331' => 'aox', 'Aqoxy3G04060' => 'aox', 'Aqoxy5G02983' => 'aox', 'Aqoxy5G02984' => 'aox', 'Aqoxy5G02999' => 'aox', 'Aqoxy6G02089' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KE6L8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4P7T15' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X1K1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T6P32' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A7PU6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BGND9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3DSYK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DBBB2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5ELT1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QWHT6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCIJ6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S0TND5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIEE6H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YQJ5CI' => 'arhy', 'AT1G14340' => 'ath', 'AT1G67950' => 'ath', 'AT3G01210' => 'ath', 'AT4G17720' => 'ath', 'AT5G16840' => 'ath', 'AT5G32450' => 'ath', 'AT5G46870' => 'ath', 'ATR0021G009' => 'atr', 'ATR0564G409' => 'atr', 'ATR0697G118' => 'atr', 'ATR0829G069' => 'atr', 'Atru.chr11.1830' => 'acertr', 'Atru.chr11.818' => 'acertr', 'Atru.chr2.1408' => 'acertr', 'Atru.chr6.1630' => 'acertr', 'Atru.chr8.129' => 'acertr', 'AUR62002074' => 'cqu', 'AUR62007337' => 'cqu', 'AUR62018663' => 'cqu', 'AUR62028187' => 'cqu', 'AUR62028189' => 'cqu', 'AUR62028191' => 'cqu', 'AUR62034388' => 'cqu', 'AUR62036277' => 'cqu', 'AUR62039725' => 'cqu', 'AUR62039828' => 'cqu', 'BcaB01g05247' => 'bca', 'BcaB02g06483' => 'bca', 'BcaB02g07034' => 'bca', 'BcaB03g13103' => 'bca', 'BcaB03g15146' => 'bca', 'BcaB03g16591' => 'bca', 'BcaB06g27051' => 'bca', 'BcaC01g04507' => 'bca', 'BcaC01g04508' => 'bca', 'BcaC03g18519' => 'bca', 'BcaC04g18842' => 'bca', 'BcaC05g25331' => 'bca', 'BcaC06g31437' => 'bca', 'BcaC06g33579' => 'bca', 'BcaC06g33580' => 'bca', 'BcaC06g33581' => 'bca', 'BcaC06g33582' => 'bca', 'BcaC06g33583' => 'bca', 'BcaC06g33585' => 'bca', 'BcaC06g34335' => 'bca', 'BcaC06g36363' => 'bca', 'BcaC07g38733' => 'bca', 'BcaC08g46217' => 'bca', 'BcaC08g46222' => 'bca', 'BcaC09g51615' => 'bca', 'BcaNung00064' => 'bca', 'BcaNung04038' => 'bca', 'BcaNung04951' => 'bca', 'BolC1t01111H' => 'bol', 'BolC2t06778H' => 'bol', 'BolC3t13423H' => 'bol', 'BolC3t16240H' => 'bol', 'BolC4t24238H' => 'bol', 'BolC5t29965H' => 'bol', 'BolC6t39224H' => 'bol', 'BolC7t40890H' => 'bol', 'BolC7t43559H' => 'bol', 'BolC7t45409H' => 'bol', 'BolC7t45410H' => 'bol', 'BolC8t49288H' => 'bol', 'BolC9t58857H' => 'bol', 'BraA01t00923Z' => 'bra', 'BraA02t05347Z' => 'bra', 'BraA03t10126Z' => 'bra', 'BraA03t12435Z' => 'bra', 'BraA03t14156Z' => 'bra', 'BraA03t14158Z' => 'bra', 'BraA06t24214Z' => 'bra', 'BraA06t27427Z' => 'bra', 'BraA07t28058Z' => 'bra', 'BraA08t35122Z' => 'bra', 'BraA10t44298Z' => 'bra', 'C01p11420' => 'bna', 'C02p08620' => 'bna', 'C03p09270' => 'bna', 'C03p39760' => 'bna', 'C04p25710' => 'bna', 'C05p12130' => 'bna', 'C07p04890' => 'bna', 'C07p30230' => 'bna', 'C07p49010' => 'bna', 'C07p49030' => 'bna', 'C07p49050' => 'bna', 'C08p16600' => 'bna', 'C09p60240' => 'bna', 'CANSAT21G2445' => 'cansat', 'CANSAT56G0957' => 'cansat', 'CANSAT64G2751' => 'cansat', 'CANSAT64G2868' => 'cansat', 'CANSAT64G2914' => 'cansat', 'CANSAT78G0310' => 'cansat', 'CANSAT78G2418' => 'cansat', 'CARHR014770' => 'chi', 'CARHR060580' => 'chi', 'CARHR075830' => 'chi', 'CARHR174580' => 'chi', 'CARHR196320' => 'chi', 'CARHR217120' => 'chi', 'CARHR224440' => 'chi', 'Carub.0001s1402' => 'cru', 'Carub.0002s1444' => 'cru', 'Carub.0003s0093' => 'cru', 'Carub.0006s1506' => 'cru', 'Carub.0007s2364' => 'cru', 'Carub.0007s3052' => 'cru', 'Carub.0008s0104' => 'cru', 'Ca_02742_v3' => 'car', 'Ca_04762_v3' => 'car', 'Ca_08148_v3' => 'car', 'Ca_08287_v3' => 'car', 'Ca_13002_v3' => 'car', 'Ca_13004_v3' => 'car', 'Ca_17249_v3' => 'car', 'Ca_22659_v3' => 'car', 'CBR_g71629' => 'cbr', 'Cc06_g07250' => 'ccan', 'Cc07_g03230' => 'ccan', 'Cc08_g03430' => 'ccan', 'Cc11_g06570' => 'ccan', 'Cc11_g13280' => 'ccan', 'CDE02G1717' => 'cde', 'CDE02G3752' => 'cde', 'CDE04G2573' => 'cde', 'CDE04G3087' => 'cde', 'CDE06G2438' => 'cde', 'CDE06G2629' => 'cde', 'CDE07G0027' => 'cde', 'CDE07G1794' => 'cde', 'CDE09G1329' => 'cde', 'CDE12G0858' => 'cde', 'Cfa007532' => 'cfa', 'Cfa009004' => 'cfa', 'Cfa026230' => 'cfa', 'Ciclev10012602m.g' => 'ccl', 'Ciclev10015346m.g' => 'ccl', 'Ciclev10016191m.g' => 'ccl', 'Ciclev10021716m.g' => 'ccl', 'Ciclev10021732m.g' => 'ccl', 'Ciclev10032573m.g' => 'ccl', 'CiPaw.03G028600' => 'cil', 'CiPaw.04G018300' => 'cil', 'CiPaw.05G137700' => 'cil', 'CiPaw.05G187700' => 'cil', 'CiPaw.06G033900' => 'cil', 'CiPaw.10G126000' => 'cil', 'CiPaw.11G097100' => 'cil', 'CiPaw.12G067100' => 'cil', 'ClCG02G007840' => 'cla', 'ClCG04G005420' => 'cla', 'ClCG05G024440' => 'cla', 'ClCG07G005450' => 'cla', 'ClCG09G016890' => 'cla', 'ClCG09G018340' => 'cla', 'ClCG10G001390' => 'cla', 'COL.COLO4_05128' => 'col', 'COL.COLO4_15225' => 'col', 'COL.COLO4_16965' => 'col', 'COL.COLO4_27609' => 'col', 'COL.COLO4_32973' => 'col', 'Cpa.g.sc14.16' => 'cpa', 'Cpa.g.sc161.3' => 'cpa', 'Cpa.g.sc2.164' => 'cpa', 'Cpa.g.sc43.92' => 'cpa', 'Cpa.g.sc90.13' => 'cpa', 'CsaV3_2G035910' => 'csa', 'CsaV3_2G036380' => 'csa', 'CsaV3_3G001470' => 'csa', 'CsaV3_4G012160' => 'csa', 'CsaV3_5G014500' => 'csa', 'CsaV3_5G032520' => 'csa', 'CsaV3_5G037940' => 'csa', 'CSS0000597' => 'camsi', 'CSS0006716' => 'camsi', 'CSS0008450' => 'camsi', 'CSS0009959' => 'camsi', 'CSS0016877' => 'camsi', 'CSS0017870' => 'camsi', 'CSS0021678' => 'camsi', 'CSS0023083' => 'camsi', 'CSS0024312' => 'camsi', 'CSS0025586' => 'camsi', 'CSS0026657' => 'camsi', 'CSS0027406' => 'camsi', 'CSS0034019' => 'camsi', 'CSS0034082' => 'camsi', 'CSS0034313' => 'camsi', 'CSS0039542' => 'camsi', 'CSS0042127' => 'camsi', 'CSS0044634' => 'camsi', 'CSS0045847' => 'camsi', 'CSS0046688' => 'camsi', 'CSS0047025' => 'camsi', 'DCAR_007142' => 'dca', 'DCAR_008239' => 'dca', 'DCAR_008240' => 'dca', 'DCAR_010538' => 'dca', 'DCAR_013477' => 'dca', 'DCAR_014071' => 'dca', 'DCAR_016965' => 'dca', 'DCAR_019852' => 'dca', 'DCAR_023562' => 'dca', 'DCAR_024957' => 'dca', 'DCAR_025112' => 'dca', 'DCAR_030192' => 'dca', 'Dinv01892' => 'din', 'Dinv11926' => 'din', 'Dinv25098' => 'din', 'Dinv25245' => 'din', 'Dinv28988' => 'din', 'Dinv33743' => 'din', 'Duzib084G0106' => 'dzi', 'Duzib106G1109' => 'dzi', 'Duzib128G1872' => 'dzi', 'Duzib128G1876' => 'dzi', 'Duzib147G1193' => 'dzi', 'Duzib147G1223' => 'dzi', 'Duzib177G0694' => 'dzi', 'Duzib177G0782' => 'dzi', 'Duzib205G0173' => 'dzi', 'Duzib251G0005' => 'dzi', 'Duzib251G0013' => 'dzi', 'Duzib264G0090' => 'dzi', 'ECA232G2679' => 'eca', 'ECA233G3221' => 'eca', 'ECA234G3726' => 'eca', 'ECA238G1035' => 'eca', 'ECA246G1529' => 'eca', 'ECA246G4740' => 'eca', 'EL10Ac2g02960' => 'bvu', 'EL10Ac3g05064' => 'bvu', 'EL10Ac5g11766' => 'bvu', 'EL10Ac5g12037' => 'bvu', 'Eucgr.A02121' => 'egr', 'Eucgr.A02974' => 'egr', 'Eucgr.B03419' => 'egr', 'Eucgr.E00239' => 'egr', 'Eucgr.E00244' => 'egr', 'Eucgr.E02851' => 'egr', 'Eucgr.G02082' => 'egr', 'Eucgr.J01216' => 'egr', 'Eucgr.K00081' => 'egr', 'FAN01G0076' => 'fan', 'FAN01G1022' => 'fan', 'FAN01G2133' => 'fan', 'FAN01G2249' => 'fan', 'FAN01G2738' => 'fan', 'FAN02G0908' => 'fan', 'FAN03G0658' => 'fan', 'FAN03G2325' => 'fan', 'FAN04G1016' => 'fan', 'FAN04G1300' => 'fan', 'FAN05G4881' => 'fan', 'FAN07G0499' => 'fan', 'FAN07G1008' => 'fan', 'FAN08G0298' => 'fan', 'FAN09G3241' => 'fan', 'FAN10G0240' => 'fan', 'FAN12G2312' => 'fan', 'FAN12G2841' => 'fan', 'FAN14G4383' => 'fan', 'FAN17G1148' => 'fan', 'FAN17G2951' => 'fan', 'FAN18G0755' => 'fan', 'FAN18G1711' => 'fan', 'FAN19G2804' => 'fan', 'FAN22G1453' => 'fan', 'FAN22G1641' => 'fan', 'FAN26G2268' => 'fan', 'FAN28G1687' => 'fan', 'FvH4_1g25684' => 'fve', 'FvH4_1g28380' => 'fve', 'FvH4_4g31610' => 'fve', 'FvH4_4g33260' => 'fve', 'FvH4_5g22870' => 'fve', 'FvH4_6g48980' => 'fve', 'FvH4_7g34070' => 'fve', 'Glyma.01G015500' => 'gma', 'Glyma.02G019000' => 'gma', 'Glyma.02G086600' => 'gma', 'Glyma.07G172700' => 'gma', 'Glyma.09G206900' => 'gma', 'Glyma.09G239200' => 'gma', 'Glyma.12G017300' => 'gma', 'Glyma.16G038800' => 'gma', 'Glyma.18G258600' => 'gma', 'Glyma.19G114000' => 'gma', 'Gohir.A02G141000' => 'ghi', 'Gohir.A03G000044' => 'ghi', 'Gohir.A03G099500' => 'ghi', 'Gohir.A05G308000' => 'ghi', 'Gohir.A09G019200' => 'ghi', 'Gohir.A11G232900' => 'ghi', 'Gohir.A12G206700' => 'ghi', 'Gohir.A13G087200' => 'ghi', 'Gohir.A13G156500' => 'ghi', 'Gohir.D02G124400' => 'ghi', 'Gohir.D03G051500' => 'ghi', 'Gohir.D03G175200' => 'ghi', 'Gohir.D05G308300' => 'ghi', 'Gohir.D09G018600' => 'ghi', 'Gohir.D11G244100' => 'ghi', 'Gohir.D12G157800' => 'ghi', 'Gohir.D12G209200' => 'ghi', 'Gohir.D13G092800' => 'ghi', 'Gohir.D13G161300' => 'ghi', 'Gorai.003G053100' => 'gra', 'Gorai.003G184200' => 'gra', 'Gorai.005G139800' => 'gra', 'Gorai.006G021900' => 'gra', 'Gorai.007G259600' => 'gra', 'Gorai.008G170600' => 'gra', 'Gorai.008G224700' => 'gra', 'Gorai.009G328600' => 'gra', 'Gorai.010G139900' => 'gra', 'Gorai.013G183100' => 'gra', 'GSVIVG01011379001' => 'vvi', 'GSVIVG01011624001' => 'vvi', 'GSVIVG01013098001' => 'vvi', 'GSVIVG01020030001' => 'vvi', 'GSVIVG01022464001' => 'vvi', 'GSVIVG01024381001' => 'vvi', 'HanXRQChr01g0026371' => 'han', 'HanXRQChr02g0049391' => 'han', 'HanXRQChr06g0172681' => 'han', 'HanXRQChr07g0197121' => 'han', 'HanXRQChr11g0334681' => 'han', 'HanXRQChr11g0347031' => 'han', 'HanXRQChr14g0453111' => 'han', 'HanXRQChr16g0512511' => 'han', 'HanXRQChr16g0527261' => 'han', 'HanXRQChr17g0538081' => 'han', 'HanXRQChr17g0545161' => 'han', 'HanXRQChr17g0566011' => 'han', 'Haze_00414' => 'cav', 'Haze_08175' => 'cav', 'Haze_10845' => 'cav', 'Haze_12033' => 'cav', 'Haze_14556' => 'cav', 'Haze_20471' => 'cav', 'Hma1.2p1_0572F.1_g181190' => 'hma', 'Hma1.2p1_0572F.1_g181200' => 'hma', 'Hma1.2p1_1538F.1_g289580' => 'hma', 'Hma1.2p1_1680F.1_g297110' => 'hma', 'Hma1.2p1_1733F.1_g299820' => 'hma', 'Hma1.2p1_1733F.1_g299830' => 'hma', 'Hma1.2p1_3278F.1_g334813' => 'hma', 'HPP92_016459' => 'vpl', 'HPP92_018636' => 'vpl', 'HPP92_022108' => 'vpl', 'HPP92_022133' => 'vpl', 'HPP92_024771' => 'vpl', 'HPP92_025856' => 'vpl', 'HPP92_027150' => 'vpl', 'Hund10816' => 'sun', 'Hund11206' => 'sun', 'Hund13224' => 'sun', 'Hund14359' => 'sun', 'Lalb_Chr01g0000891' => 'lal', 'Lalb_Chr05g0215831' => 'lal', 'Lalb_Chr06g0174081' => 'lal', 'Lalb_Chr09g0325561' => 'lal', 'Lalb_Chr10g0093321' => 'lal', 'Lalb_Chr10g0098141' => 'lal', 'Lalb_Chr13g0298641' => 'lal', 'Lalb_Chr16g0387421' => 'lal', 'Lalb_Chr17g0338401' => 'lal', 'Lalb_Chr22g0358911' => 'lal', 'Lj1C1033T24' => 'lonja', 'Lj1g0009798' => 'lja', 'Lj1g0013665' => 'lja', 'Lj1g0018194' => 'lja', 'Lj2A418T68' => 'lonja', 'Lj2A418T69' => 'lonja', 'Lj2g0003405' => 'lja', 'Lj2g0018340' => 'lja', 'Lj2g0018612' => 'lja', 'Lj2P233T36' => 'lonja', 'Lj4g0001118' => 'lja', 'Lj5g0000224' => 'lja', 'Lj6C734G7' => 'lonja', 'Lj6C792T0' => 'lonja', 'Lj7A397T30' => 'lonja', 'Lj8C306G5' => 'lonja', 'Lsat_1_v5_gn_1_56260' => 'lsa', 'Lsat_1_v5_gn_2_103961' => 'lsa', 'Lsat_1_v5_gn_3_19600' => 'lsa', 'Lsat_1_v5_gn_3_68461' => 'lsa', 'Lsat_1_v5_gn_4_23380' => 'lsa', 'Lsat_1_v5_gn_4_36960' => 'lsa', 'Lsat_1_v5_gn_5_106901' => 'lsa', 'Lsat_1_v5_gn_6_3440' => 'lsa', 'Lsat_1_v5_gn_7_39100' => 'lsa', 'Lsat_1_v5_gn_8_52100' => 'lsa', 'Lsat_1_v5_gn_9_47681' => 'lsa', 'Manes.01G187800' => 'mes', 'Manes.05G099033' => 'mes', 'Manes.08G146100' => 'mes', 'Manes.09G125200' => 'mes', 'Manes.09G139000' => 'mes', 'Manes.15G177100' => 'mes', 'Manes.17G010500' => 'mes', 'Mapoly0105s0056' => 'mpo', 'MBI02_g33380_MAGBIO' => 'mbi', 'MBI02_g42633_MAGBIO' => 'mbi', 'MBI05_g25766_MAGBIO' => 'mbi', 'MBI05_g25767_MAGBIO' => 'mbi', 'MBI07_g41863_MAGBIO' => 'mbi', 'MBI07_g42008_MAGBIO' => 'mbi', 'MD01G1236900' => 'mdo', 'MD06G1025100' => 'mdo', 'MD06G1025200' => 'mdo', 'MD07G1309500' => 'mdo', 'MD09G1049200' => 'mdo', 'MD11G1185100' => 'mdo', 'MD12G1007200' => 'mdo', 'MD13G1017900' => 'mdo', 'MD13G1074500' => 'mdo', 'MD16G1015900' => 'mdo', 'MD16G1075800' => 'mdo', 'MD17G1049200' => 'mdo', 'Medtr1g032860' => 'mtr', 'Medtr5g029640' => 'mtr', 'Medtr5g038107' => 'mtr', 'Medtr5g039130' => 'mtr', 'Medtr7g010100' => 'mtr', 'Medtr7g086080' => 'mtr', 'Medtr8g066460' => 'mtr', 'Medtr8g105910' => 'mtr', 'MELO3C008814.2' => 'cme', 'MELO3C012080.2' => 'cme', 'MELO3C013833.2' => 'cme', 'MELO3C016673.2' => 'cme', 'MELO3C021893.2' => 'cme', 'MELO3C021980.2' => 'cme', 'MELO3C024750.2' => 'cme', 'MELO3C030244.2' => 'cme', 'MELO3C032755.2' => 'cme', 'MELO3C033450.2' => 'cme', 'Migut.E00495' => 'egut', 'Migut.E00777' => 'egut', 'Migut.F00090' => 'egut', 'Migut.H00908' => 'egut', 'Migut.J00761' => 'egut', 'Migut.L01317' => 'egut', 'MSTRG.13410' => 'ama', 'MSTRG.13746' => 'ama', 'MSTRG.1997' => 'ama', 'MSTRG.23949' => 'ama', 'MSTRG.26563' => 'ama', 'MSTRG.5925' => 'ama', 'MSTRG.7816' => 'ama', 'Nitab4.5_0000021g0620' => 'nta', 'Nitab4.5_0000123g0030' => 'nta', 'Nitab4.5_0000274g0110' => 'nta', 'Nitab4.5_0000529g0020' => 'nta', 'Nitab4.5_0001108g0060' => 'nta', 'Nitab4.5_0001762g0030' => 'nta', 'Nitab4.5_0002131g0050' => 'nta', 'Nitab4.5_0002151g0060' => 'nta', 'Nitab4.5_0002193g0010' => 'nta', 'Nitab4.5_0003586g0010' => 'nta', 'Nitab4.5_0009386g0020' => 'nta', 'Nn1g01981' => 'nnu', 'Nn3g16209' => 'nnu', 'Nn3g16210' => 'nnu', 'Nn3g17175' => 'nnu', 'Nn3g18426' => 'nnu', 'Nn3g19410' => 'nnu', 'Nn3g19542' => 'nnu', 'Nn4g23095' => 'nnu', 'Nn4g24464' => 'nnu', 'Nn6g32410' => 'nnu', 'Oeu000619.1' => 'oeu', 'Oeu002584.1' => 'oeu', 'Oeu006300.3' => 'oeu', 'Oeu020208.2' => 'oeu', 'Oeu020863.3' => 'oeu', 'Oeu028871.1' => 'oeu', 'Oeu029557.2' => 'oeu', 'Oeu038093.1' => 'oeu', 'Os03g0713600' => 'osa', 'Os03g0748900' => 'osa', 'Os04g0594400' => 'osa', 'Os04g0624800' => 'osa', 'Os04g0641400' => 'osa', 'Os06g0112400' => 'osa', 'Os11g0549537' => 'osa', 'Peaxi162Scf00003g05369' => 'pax', 'Peaxi162Scf00133g00613' => 'pax', 'Peaxi162Scf00170g00921' => 'pax', 'Peaxi162Scf00503g00418' => 'pax', 'Peaxi162Scf00516g00664' => 'pax', 'Peaxi162Scf00777g00048' => 'pax', 'Peaxi162Scf00815g00356' => 'pax', 'PGR042G0529' => 'pgr', 'PGR042G0913' => 'pgr', 'PGR042G1108' => 'pgr', 'PGR083G0004' => 'pgr', 'PGR102G1291' => 'pgr', 'PGR142G2551' => 'pgr', 'PGSC0003DMG400003159' => 'stu', 'PGSC0003DMG400006894' => 'stu', 'PGSC0003DMG400014809' => 'stu', 'PGSC0003DMG400025609' => 'stu', 'PGSC0003DMG400027035' => 'stu', 'PGSC0003DMG402007209' => 'stu', 'Phvul.001G113300' => 'pvu', 'Phvul.002G088500' => 'pvu', 'Phvul.002G138100' => 'pvu', 'Phvul.003G016000' => 'pvu', 'Phvul.003G283600' => 'pvu', 'Phvul.004G050700' => 'pvu', 'Phvul.008G041900' => 'pvu', 'Phvul.011G019600' => 'pvu', 'Potri.001G138400' => 'ptr', 'Potri.003G095400' => 'ptr', 'Potri.010G103600' => 'ptr', 'Potri.013G055100' => 'ptr', 'Potri.017G081400' => 'ptr', 'Potri.017G081500' => 'ptr', 'Potri.019G037600' => 'ptr', 'Pp3c18_3230' => 'ppa', 'Pp3c19_9760' => 'ppa', 'Pp3c20_4940' => 'ppa', 'Pp3c22_22390' => 'ppa', 'Pp3c23_20750' => 'ppa', 'Prupe.1G271600' => 'ppe', 'Prupe.1G335700' => 'ppe', 'Prupe.2G327200' => 'ppe', 'Prupe.3G269600' => 'ppe', 'Prupe.5G029900' => 'ppe', 'Prupe.7G008000' => 'ppe', 'Psat0s2923g0040' => 'psa', 'Psat2g123160' => 'psa', 'Psat3g087680' => 'psa', 'Psat3g196400' => 'psa', 'Psat4g004520' => 'psa', 'Psat4g122600' => 'psa', 'Psat6g004040' => 'psa', 'Psat6g051120' => 'psa', 'PSO017G1771' => 'pso', 'PSO063G5991' => 'pso', 'PSO063G7077' => 'pso', 'PSO384G2219' => 'pso', 'PSO478G3055' => 'pso', 'PSO675G7805' => 'pso', 'PSO717G0142' => 'pso', 'PSO782G0093' => 'pso', 'PSO832G1730' => 'pso', 'QL02p081468' => 'qlo', 'QL03p038232' => 'qlo', 'QL03p064856' => 'qlo', 'QL06p004686' => 'qlo', 'QL07p018974' => 'qlo', 'QL09p023294' => 'qlo', 'QL12p001218' => 'qlo', 'RcHm_v2.0_Chr1g0313801' => 'rch', 'RcHm_v2.0_Chr1g0341411' => 'rch', 'RcHm_v2.0_Chr1g0378871' => 'rch', 'RcHm_v2.0_Chr1g0384341' => 'rch', 'RcHm_v2.0_Chr2g0168821' => 'rch', 'RcHm_v2.0_Chr3g0496611' => 'rch', 'RcHm_v2.0_Chr4g0397581' => 'rch', 'RcHm_v2.0_Chr4g0440121' => 'rch', 'RcHm_v2.0_Chr4g0442411' => 'rch', 'RcHm_v2.0_Chr5g0046611' => 'rch', 'RcHm_v2.0_Chr5g0076531' => 'rch', 'RcHm_v2.0_Chr5g0077261' => 'rch', 'RcHm_v2.0_Chr6g0266381' => 'rch', 'RcHm_v2.0_Chr7g0210931' => 'rch', 'RcHm_v2.0_Chr7g0211571' => 'rch', 'Rhsim03G0054700' => 'rsi', 'Rhsim03G0222500' => 'rsi', 'Rhsim10G0041000' => 'rsi', 'Rhsim11G0019600' => 'rsi', 'Sabra01G0107200' => 'sbr', 'Sabra03G0064300' => 'sbr', 'Sabra10G0076200' => 'sbr', 'Sabra17G0072600' => 'sbr', 'Sabra19G0048900' => 'sbr', 'SalBow1G4234' => 'sbo', 'SalBow2G0828' => 'sbo', 'SalBow2G1857' => 'sbo', 'SalBow4G1577' => 'sbo', 'SalBow8G1497' => 'sbo', 'Sc01g0005110' => 'sci', 'Sc01g0007270' => 'sci', 'Sc11g0007020' => 'sci', 'Sc19g0000120' => 'sci', 'Sed0001432' => 'sed', 'Sed0003399' => 'sed', 'Sed0004959' => 'sed', 'Sed0007997' => 'sed', 'Sed0012917' => 'sed', 'Sed0019813' => 'sed', 'Sed0026338' => 'sed', 'Sed0027016' => 'sed', 'SEGI_14673' => 'sgi', 'SEGI_34196' => 'sgi', 'SGA_v2.0_scaffold18G08515' => 'sas', 'SGA_v2.0_scaffold20G09264' => 'sas', 'SGA_v2.0_scaffold302G47837' => 'sas', 'SGA_v2.0_scaffold31G12804' => 'sas', 'SGA_v2.0_scaffold44G16899' => 'sas', 'SGA_v2.0_scaffold6G03152' => 'sas', 'SHI04345' => 'shi', 'SMO358G0712' => 'smo', 'Solyc02g067390.3' => 'sly', 'Solyc03g097110.4' => 'sly', 'Solyc05g007200.4' => 'sly', 'Solyc06g072770.3' => 'sly', 'Solyc08g076530.3' => 'sly', 'Solyc10g076890.3' => 'sly', 'Sopen02g016530' => 'spe', 'Sopen03g027850' => 'spe', 'Sopen05g003160' => 'spe', 'Sopen06g029150' => 'spe', 'Sopen08g025110' => 'spe', 'Sopen10g028580' => 'spe', 'Sp1g12690' => 'spa', 'Sp2g11670' => 'spa', 'Sp3g00890' => 'spa', 'Sp3g31480' => 'spa', 'Sp5g22970' => 'spa', 'Sp6g27280' => 'spa', 'Sp7g16390' => 'spa', 'TAR371G0249' => 'tar', 'TAR371G0702' => 'tar', 'TAR371G0862' => 'tar', 'TAR374G1002' => 'tar', 'TAR375G0467' => 'tar', 'TAR375G0835' => 'tar', 'TAR622G1301' => 'tar', 'TAR633G2015' => 'tar', 'TAR636G2913' => 'tar', 'THA.LOC104800243' => 'tha', 'THA.LOC104805993' => 'tha', 'THA.LOC104806694' => 'tha', 'THA.LOC104821169' => 'tha', 'THA.LOC104821468' => 'tha', 'THA.LOC104824083' => 'tha', 'THA.LOC104825573' => 'tha', 'Thecc.02G307400' => 'tca', 'Thecc.02G348800' => 'tca', 'Thecc.03G307700' => 'tca', 'Thecc.04G078700' => 'tca', 'Thecc.04G078900' => 'tca', 'Thecc.05G215300' => 'tca', 'Thecc.05G246700' => 'tca', 'Thhalv10001235m.g' => 'esa', 'Thhalv10008608m.g' => 'esa', 'Thhalv10014416m.g' => 'esa', 'Thhalv10018968m.g' => 'esa', 'Thhalv10021386m.g' => 'esa', 'Thhalv10022812m.g' => 'esa', 'Thhalv10025761m.g' => 'esa', 'TPR.G14280' => 'tpr', 'TPR.G19253' => 'tpr', 'TPR.G31020' => 'tpr', 'TPR.G3362' => 'tpr', 'TPR.G4107' => 'tpr', 'TPR.G6493' => 'tpr', 'TPR.G8079' => 'tpr', 'TWI15G1141' => 'twi', 'TWI18G1073' => 'twi', 'TWI32G0316' => 'twi', 'TWI34G1045' => 'twi', 'TWI60G0527' => 'twi', 'TWI60G1363' => 'twi', 'TWI74G0296' => 'twi', 'TWI81G0414' => 'twi', 'unitig_22.g5543' => 'ugi', 'unitig_27.g24736' => 'ugi', 'unitig_27.g25163' => 'ugi', 'unitig_52.g17201' => 'ugi', 'unitig_699.g19790' => 'ugi', 'unitig_8.g3468' => 'ugi', 'unitig_92.g28228' => 'ugi', 'vmacro00295' => 'vma', 'vmacro00302' => 'vma', 'vmacro05717' => 'vma', 'vmacro06520' => 'vma', 'vmacro06521' => 'vma', 'vmacro07549' => 'vma', 'vmacro07550' => 'vma', 'vmacro08575' => 'vma', 'vmacro22179' => 'vma', 'vmacro22180' => 'vma', 'VMungo0251G0220' => 'vmu', 'VMungo1127G1400' => 'vmu', 'VMungo1215G1061' => 'vmu', 'VMungo1215G2472' => 'vmu', 'VMungo1215G3443' => 'vmu', 'VMungo1383G0416' => 'vmu', 'VMungo1383G2053' => 'vmu', 'Zm00001eb035430' => 'zma', 'Zm00001eb036540' => 'zma', 'Zm00001eb055110' => 'zma', 'Zm00001eb068910' => 'zma', 'Zm00001eb072190' => 'zma', 'Zm00001eb187840' => 'zma', 'Zm00001eb201610' => 'zma', 'Zm00001eb209900' => 'zma', 'Zm00001eb214900' => 'zma', 'Zm00001eb216160' => 'zma', 'Zm00001eb223750' => 'zma', 'Zm00001eb223760' => 'zma', 'Zm00001eb244740' => 'zma', 'Zm00001eb268790' => 'zma', 'Zm00001eb284980' => 'zma', 'Zm00001eb284990' => 'zma', 'Zm00001eb379100' => 'zma', 'Zm00001eb384170' => 'zma', 'Zm00001eb390160' => 'zma', 'Zm00001eb429380' => 'zma', 'Zm00001eb430040' => 'zma', 'Zm00001eb431910' => 'zma' ) $gf_id = 'HOM05D000742' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000742' ) $data_identifier = 'HOM05D000742' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 13, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 11, 'cansat' => (int) 7, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 5, 'cde' => (int) 10, 'cfa' => (int) 3, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 7, 'camsi' => (int) 21, 'dca' => (int) 12, 'din' => (int) 6, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 28, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 6, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 8, 'lja' => (int) 8, 'lsa' => (int) 11, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 10, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 10, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 6, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 10, 'vmu' => (int) 7, 'zma' => (int) 22 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431910' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1